Basic Information
Locus ID:
SOLCI004987300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4821 | 14352 | 15717 | - | SOLCI004987300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 33,237.92 Da | 46.50 | 88.92 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 250 | 292 | 3.07701E-15 | - |
| Pfam | PF13639 | Ring finger domain | 250 | 292 | 8.8E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 93 | 4.5E-14 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 295 | 2.19E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 297 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 250 | 291 | 5.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 292 | 12.1057 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010327016.1 | putative RING-H2 finger protein ATL21A [Solanum lycopersicum] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2B210 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017928 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645453 |
| Solanaceae | Solanum chilense | 1 | SOLCI004987300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007837 |