Basic Information
Locus ID:
SOLCI004976100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4803 | 7727 | 10293 | + | SOLCI004976100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 87,021.41 Da | 53.60 | 69.41 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 292 | 433 | 2.7E-37 | IPR025558 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 765 | - | - |
| Coils | Coil | Coil | 42 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015160869.1 | PREDICTED: uncharacterized protein LOC107059016 [Solanum tuberosum] | 0 |
| TrEMBL | A0A6N2B5Y4 | DUF4283 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.681.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g04130 |
| Solanaceae | Lycium barbarum | 44 | gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... |
| Solanaceae | Solanum chilense | 37 | SOLCI000177100, SOLCI000563900, SOLCI001032000 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107022842, gene-LOC114076821, gene-LOC114077933 |