Basic Information
Locus ID:
SOLCI004961900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4788 | 13324 | 18200 | + | SOLCI004961900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 36,094.73 Da | 42.69 | 69.53 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 54 | 92 | 1.92835E-14 | - |
| CDD | cd03829 | Sina | 170 | 298 | 1.31097E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 98 | 297 | 3.1E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 98 | 3.53E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 109 | 301 | 1.7E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 163 | 297 | 9.8E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 108 | 2.9E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 162 | 8.1E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 109 | 169 | 14.08312 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 92 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_015077249.1 | E3 ubiquitin-protein ligase SINAT3 [Solanum pennellii] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B4Y9 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_017867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology