Basic Information
Locus ID:
SOLCI004957600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4783 | 525 | 6834 | + | SOLCI004957600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 143,181.95 Da | 47.04 | 89.80 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 33 | 164 | 9.95913E-17 | - |
| CDD | cd12108 | Hr-like | 609 | 749 | 4.61063E-18 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1140 | 1183 | 3.14592E-22 | - |
| Pfam | PF14599 | Zinc-ribbon | 1188 | 1245 | 5.4E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1140 | 1182 | 2.2E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 1012 | 1087 | 1.4E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 36 | 165 | 3.7E-7 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1140 | 1190 | 3.85E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1004 | 1068 | 8.76E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1078 | 1132 | 1.23E-14 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 29 | 183 | 3.6E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 607 | 771 | 1.1E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 279 | 428 | 3.9E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1134 | 1185 | 3.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1212 | 1247 | 7.6E-17 | - |
| SMART | SM00184 | ring_2 | 1141 | 1182 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1077 | 1140 | 27.13711 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1141 | 1183 | 11.781134 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1005 | 1074 | 23.725248 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_010318962.1 | zinc finger protein BRUTUS-like At1g74770 isoform X1 [Solanum lycopersicum] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B641 | Zinc finger protein BRUTUS-like At1g18910 OS=Solanum chilense OX=4083 GN=EJD97_017858 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology