Basic Information
Locus ID:
SOLCI004901300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4712 | 5172 | 9532 | + | SOLCI004901300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 74,886.31 Da | 54.56 | 55.92 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 533 | 614 | 4.6E-13 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 632 | 662 | 2.8E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 533 | 615 | 1.4E-21 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 589 | - | - |
| Coils | Coil | Coil | 532 | 559 | - | - |
| Coils | Coil | Coil | 570 | 590 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_015078114.1 | trichohyalin-like isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2B2K1 | PAPA-1 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017667 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology