Basic Information
Locus ID:
SOLCI004878800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4685 | 85041 | 88504 | - | SOLCI004878800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 123,795.75 Da | 33.42 | 101.48 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 601 | 620 | 0.21 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 846 | 1110 | 2.4E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 8.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 62 | 2.7E-7 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 310 | 419 | 8.16E-16 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 828 | 1110 | 4.45E-70 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 428 | 742 | 5.02E-57 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 66 | 347 | 5.34E-49 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 916 | 1115 | 7.2E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 284 | 1.0E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 356 | 453 | 4.7E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 183 | 4.9E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 809 | 915 | 5.2E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 454 | 770 | 1.0E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 285 | 355 | 6.3E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 429 | 453 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 575 | 599 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 213 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 118 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 455 | 479 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 600 | 623 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 696 | 720 | 65.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 843 | 1113 | 2.8E-38 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 333 | 357 | 190.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 601 | 623 | 7.257614 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 843 | 1115 | 37.544865 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 961 | 973 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 849 | 873 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 696 | 709 | 2.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 602 | 615 | 2.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_004235118.1 | leucine-rich repeat receptor-like protein kinase PEPR1 [Solanum lycopersicum] | 0 |
| P93194 | Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2B2T0 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017582 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |