Basic Information
Locus ID:
SOLCI004842000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4635 | 12481 | 16004 | - | SOLCI004842000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 125,397.40 Da | 35.27 | 108.93 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.7E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 561 | 620 | 1.2E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 433 | 455 | 1.7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 849 | 1119 | 2.3E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 682 | 703 | 0.028 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 489 | 510 | 0.16 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 166 | 187 | 0.016 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 826 | 1122 | 1.37E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 518 | 769 | 5.53E-57 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 164 | 514 | 5.26E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 70 | 155 | 4.08E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 308 | 476 | 3.8E-44 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 924 | 1128 | 3.7E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 828 | 923 | 7.0E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 307 | 3.0E-66 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 477 | 780 | 1.2E-85 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 703 | 727 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 455 | 479 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 583 | 606 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 116 | 140 | 4.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 535 | 559 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 406 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 285 | 309 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 607 | 631 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 702 | 240.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 309 | 335 | 5.7 | - |
| SMART | SM00365 | LRR_sd22_2 | 431 | 454 | 380.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 285 | 308 | 55.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 535 | 567 | 450.0 | - |
| SMART | SM00220 | serkin_6 | 848 | 1128 | 1.1E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 92 | 115 | 300.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 679 | 708 | 630.0 | - |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 25.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 583 | 609 | 280.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 848 | 1129 | 35.269291 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 854 | 876 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 967 | 979 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_027771995.1 | receptor kinase-like protein Xa21 [Solanum pennellii] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B326 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017432 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |