Basic Information
Locus ID:
SOLCI004832100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold462 | 134103 | 135314 | - | SOLCI004832100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 44,307.61 Da | 38.57 | 108.14 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 66 | 2.0E-7 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 190 | 205 | 1.6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 147 | 167 | 0.18 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 367 | 3.06E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 368 | 5.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 189 | 1.5E-35 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 237 | 250 | 9.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 147 | 160 | 9.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_004242322.1 | receptor-like protein 31 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2CEK6 | LRRNT_2 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology