Basic Information
Locus ID:
SOLCI004831200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold462 | 81299 | 89641 | + | SOLCI004831200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 32,474.72 Da | 49.57 | 54.25 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 214 | 271 | 4.5E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 166 | 209 | 1.2E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 32 | 112 | 5.7E-20 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 103 | 160 | 1.96E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 217 | 5.89E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 29 | 102 | 3.14E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 239 | 1.5E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 240 | 277 | 6.3E-18 | - |
| SMART | SM00184 | ring_2 | 167 | 209 | 5.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 210 | 11.500827 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 102 | 166 | 32.596294 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 25 | 100 | 24.781464 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010323027.1 | E3 ubiquitin-protein ligase MIEL1 [Solanum lycopersicum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CES2 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017385 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology