Basic Information
Locus ID:
SOLCI004828500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4617 | 22328 | 29061 | + | SOLCI004828500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 99,122.80 Da | 70.62 | 61.97 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 812 | 852 | 4.78998E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 810 | 857 | 7.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 812 | 858 | 3.43E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 794 | 863 | 6.4E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 813 | 852 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 81 | - | - |
| Coils | Coil | Coil | 743 | 763 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015058595.1 | uncharacterized protein LOC107004761 isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2B5J2 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology