Basic Information
Locus ID:
SOLCI004800100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold458 | 81617 | 91070 | - | SOLCI004800100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 77,460.52 Da | 38.34 | 89.79 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 422 | 689 | 1.38049E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 122 | 181 | 1.4E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 418 | 686 | 6.6E-42 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 66 | 2.3E-10 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 396 | 686 | 1.37E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 237 | 7.37E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 252 | 6.7E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 384 | 491 | 4.1E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 708 | 7.9E-54 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 689 | 35.721577 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 422 | 445 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 281 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_015069589.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Solanum pennellii] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C999 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017287 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology