Basic Information
Locus ID:
SOLCI004760800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4531 | 51487 | 52530 | - | SOLCI004760800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 39,264.43 Da | 51.19 | 84.03 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 206 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 45 | 306 | 6.83E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 347 | 1.8E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 165 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 113 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 300 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 300 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_015071333.1 | WD repeat-containing protein LWD1 [Solanum pennellii] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B6G9 | WD_REPEATS_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017102 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology