Basic Information
Locus ID:
SOLCI004757300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4529 | 14729 | 15880 | - | SOLCI004757300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 44,323.33 Da | 46.23 | 89.27 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 215 | 322 | 7.6E-8 | IPR013187 |
| Pfam | PF12937 | F-box-like | 10 | 50 | 1.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 71 | 4.58E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 50 | 5.1E-6 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 2.9E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 125 | 321 | 6.5E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 50 | 11.511044 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33020.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015082544.2 | putative F-box protein At4g38870 [Solanum pennellii] | 0 |
| Q9MAP1 | Putative F-box protein At1g33020 OS=Arabidopsis thaliana OX=3702 GN=At1g33020 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6N2BBI7 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619443, gene-LOC132619444, gene-LOC132628912 |
| Solanaceae | Solanum chilense | 3 | SOLCI001075800, SOLCI004757200, SOLCI004757300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107019849, gene-LOC107025258, gene-LOC107026181 |