Basic Information
Locus ID:
SOLCI004757200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4529 | 13103 | 14232 | + | SOLCI004757200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 36,969.46 Da | 37.28 | 95.58 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 163 | 247 | 2.9E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 65 | 6.93E-7 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 88 | 263 | 1.4E-10 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 54 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015169721.1 | PREDICTED: putative F-box protein At4g38870 [Solanum tuberosum] | 0 |
| Q9LFW0 | Putative F-box protein At5g15660 OS=Arabidopsis thaliana OX=3702 GN=At5g15660 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6N2B3T8 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017094 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619443, gene-LOC132619444, gene-LOC132628912 |
| Solanaceae | Solanum chilense | 3 | SOLCI001075800, SOLCI004757200, SOLCI004757300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107019849, gene-LOC107025258, gene-LOC107026181 |