Basic Information
Locus ID:
SOLCI004699500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4454 | 14257 | 15771 | + | SOLCI004699500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 21,612.72 Da | 52.98 | 66.80 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 62 | 1.92E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 65 | 1.3E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 16 | 60 | 0.0013 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 61 | 11.013978 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 94 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_049354806.1 | E3 ubiquitin-protein ligase IPI1-like [Solanum verrucosum] | 0 |
| TrEMBL | A0A6N2B518 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016863 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642216 |
| Solanaceae | Solanum chilense | 2 | SOLCI004699400, SOLCI004699500 |