Basic Information
Locus ID:
SOLCI004672700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4420 | 28341 | 29939 | + | SOLCI004672700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 24,597.04 Da | 55.85 | 70.26 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 98 | 161 | 1.18879E-11 | - |
| Pfam | PF12906 | RING-variant domain | 98 | 160 | 2.8E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 163 | 6.18E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 170 | 2.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 97 | 161 | 4.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 90 | 167 | 17.261196 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004240387.1 | uncharacterized protein LOC101261417 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2B8S4 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016754 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology