Basic Information
Locus ID:
SOLCI004650700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold44 | 4596 | 11353 | - | SOLCI004650700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 85,268.32 Da | 50.59 | 67.18 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 505 | 783 | 1.56383E-63 | - |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 665 | 700 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 533 | 7.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 541 | 575 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 581 | 618 | 0.083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 748 | 783 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 505 | 783 | 2.93E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 635 | 783 | 7.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 486 | 634 | 1.8E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 662 | 700 | 7.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 533 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 744 | 783 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 575 | 1.9E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 622 | 659 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 703 | 742 | 3.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 586 | 628 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 751 | 783 | 12.367405 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 543 | 575 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 751 | 783 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 669 | 709 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 543 | 575 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 508 | 542 | 9.706414 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 520 | 534 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 770 | 783 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 520 | 534 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 562 | 576 | 4.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 416 | - | - |
| Coils | Coil | Coil | 79 | 111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | NP_001352548.1 | transcriptional corepressor LUG3 [Solanum lycopersicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CEG2 | LisH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016642 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology