Basic Information
Locus ID:
SOLCI004631100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4377 | 442 | 1548 | - | SOLCI004631100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 41,140.97 Da | 38.74 | 87.50 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 44 | 8.0E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 72 | 6.76E-14 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 63 | 308 | 2.22E-16 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 57 | 335 | 2.4E-16 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 7.5E-11 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 1.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 93 | 290 | 7.8E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 11.934954 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015068078.1 | F-box protein At5g49610-like [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2B4M9 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25406, jg25407 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127810 |
| Apiaceae | Apium graveolens | 1 | Ag5G00134 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027755 |
| Salicaceae | Populus euphratica | 1 | populus_peu33748 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012683 |