Basic Information
Locus ID:
SOLCI004618800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4360 | 58881 | 59822 | - | SOLCI004618800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 36,317.53 Da | 54.01 | 87.16 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 250 | 291 | 4.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 297 | 6.06E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 299 | 2.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 250 | 290 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 291 | 12.371254 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10815.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006341219.1 | PREDICTED: uncharacterized protein LOC102583801 [Solanum tuberosum] | 0 |
| Q6AXU4 | E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B782 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016541 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628771 |
| Solanaceae | Solanum chilense | 2 | SOLCI004618700, SOLCI004618800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031202 |