Basic Information
Locus ID:
SOLCI004618700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4360 | 52793 | 53776 | - | SOLCI004618700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 37,253.29 Da | 49.74 | 76.85 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 258 | 300 | 9.56224E-15 | - |
| Pfam | PF13639 | Ring finger domain | 258 | 300 | 6.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 306 | 9.84E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 308 | 3.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 259 | 299 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 259 | 300 | 12.887609 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02750.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015087971.1 | uncharacterized protein LOC107031202 [Solanum pennellii] | 0 |
| Q6AXU4 | E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B4S8 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628771 |
| Solanaceae | Solanum chilense | 2 | SOLCI004618700, SOLCI004618800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031202 |