Basic Information
Locus ID:
SOLCI004588200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4323 | 92853 | 93422 | - | SOLCI004588200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.27 | 20,910.58 Da | 73.47 | 54.71 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 141 | 178 | 4.56635E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 139 | 182 | 6.5E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 185 | 5.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 189 | 4.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 178 | 6.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 179 | 10.689412 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 76 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_049348451.1 | uncharacterized protein LOC125813006 [Solanum verrucosum] | 0 |
| TrEMBL | A0A6N2B7E9 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016426 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology