Basic Information
Locus ID:
SOLCI004571300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4302 | 46641 | 50264 | - | SOLCI004571300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 22,562.77 Da | 55.57 | 91.40 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 71 | 2.98733E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.6E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 85 | 170 | 8.5E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 81 | 5.49E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 80 | 1.2E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.2E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.786301 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 178 | 12.077448 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.8E-31 | IPR002100 |
| Coils | Coil | Coil | 86 | 106 | - | - |
| Coils | Coil | Coil | 123 | 143 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58780.1 | K-box region and MADS-box transcription factor family protein . One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. | 0 |
| RefSeq | NP_001234105.2 | MADS-box transcription factor TDR8 [Solanum lycopersicum] | 0 |
| Q93XH4 | Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B7J4 | MADS-box transcription factor OS=Solanum chilense OX=4083 GN=EJD97_016357 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology