Basic Information
Locus ID:
SOLCI004452500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
4Fe-4S single cluster domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4172 | 3494 | 25563 | - | SOLCI004452500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 45,409.96 Da | 47.38 | 92.47 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01335 | Radical_SAM | 157 | 349 | 6.61078E-13 | - |
| Pfam | PF04055 | Radical SAM superfamily | 153 | 314 | 1.8E-15 | IPR007197 |
| Pfam | PF13394 | 4Fe-4S single cluster domain | 157 | 250 | 5.5E-5 | - |
| SUPERFAMILY | SSF102114 | Radical SAM enzymes | 131 | 369 | 3.53E-20 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 107 | 390 | 4.4E-110 | IPR013785 |
| Gene3D | G3DSA:1.10.150.530 | - | 26 | 101 | 1.2E-13 | - |
| SMART | SM00729 | MiaB | 148 | 357 | 0.0011 | IPR006638 |
| TIGRFAM | TIGR00048 | rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase | 45 | 385 | 3.7E-119 | IPR027492 |
| PIRSF | PIRSF006004 | Cfr | 34 | 401 | 2.5E-128 | IPR004383 |
| ProSiteProfiles | PS51918 | Radical SAM core domain profile. | 144 | 374 | 36.798325 | IPR007197 |
| Hamap | MF_01849 | Dual-specificity RNA methyltransferase RlmN [rlmN]. | 43 | 388 | 62.89365 | IPR027492 |
| SFLD | SFLDG01062 | methyltransferase (Class A) | 40 | 388 | 0.0 | - |
| SFLD | SFLDF00275 | adenosine C2 methyltransferase (RlmN-like) | 40 | 388 | 0.0 | IPR004383 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39670.1 | Radical SAM superfamily protein. | 0 |
| RefSeq | XP_004240772.1 | uncharacterized protein LOC101253790 isoform X1 [Solanum lycopersicum] | 0 |
| B0C9F4 | Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rlmN PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2B8N4 | Radical SAM core domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_015874 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14338 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16563 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035392 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g024800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21198, Sbi_jg22605 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16497 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016311 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62581, Sgl67128 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019492, gene:ENSEOMG00000048731 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0018360, CQ.Regalona.r1.2AG0020180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175600 |
| Apiaceae | Apium graveolens | 1 | Ag9G00023 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G008010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721994 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.185.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G03425 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39670.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016689m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21930.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g005180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1121 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1164 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00780 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0489s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g14040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1738 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040119 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33725 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4657, BH02.4725, CH02.4745 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0048280, gene-QOZ80_1BG0098170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0329300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_059015 |
| Poaceae | Oryza coarctata | 2 | Oco01G031110, Oco02G032270 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g74190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G419500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201670 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G024100, Chr08G017570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G895700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG086420 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G530100.1, TraesCS3B02G600200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb179610_P001, Zm00001eb362190_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10745 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9448 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.886, evm.TU.LG25.446 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1733 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26004 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7647 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4537 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.966 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001314 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2087 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9453 |
| Salicaceae | Populus euphratica | 1 | populus_peu06439 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606149 |
| Solanaceae | Solanum chilense | 1 | SOLCI004452500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023407 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10680 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0770 |
| Zosteraceae | Zostera marina | 1 | Zosma01g16270.v3.1 |