Basic Information
Locus ID:
SOLCI004429900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold415 | 52063 | 60402 | - | SOLCI004429900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 98,163.01 Da | 39.26 | 85.09 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 152 | 273 | 1.96634E-57 | - |
| CDD | cd18635 | CD_CMT3_like | 418 | 474 | 6.18792E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 483 | 833 | 2.8E-32 | IPR001525 |
| Pfam | PF01426 | BAH domain | 154 | 261 | 6.0E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 419 | 473 | 8.3E-12 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 302 | 834 | 7.83E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 412 | 478 | 1.47E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 288 | 391 | 1.5E-12 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 257 | 1.0E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 637 | 800 | 2.9E-218 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 417 | 851 | 2.9E-218 | - |
| SMART | SM00439 | BAH_4 | 153 | 272 | 1.1E-12 | IPR001025 |
| SMART | SM00298 | chromo_7 | 418 | 477 | 1.2E-11 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 419 | 472 | 13.317701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 153 | 272 | 16.928211 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 302 | 841 | 44.992771 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 442 | 462 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 489 | 501 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 532 | 546 | 7.3E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 303 | 319 | 7.3E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 578 | 591 | 7.3E-13 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_004228597.2 | DNA (cytosine-5)-methyltransferase 1 isoform X2 [Solanum lycopersicum] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CFD9 | DNA (cytosine-5-)-methyltransferase OS=Solanum chilense OX=4083 GN=EJD97_015750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology