Basic Information
Locus ID:
SOLCI004419800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
BRIGHT, ARID (A/T-rich interaction domain) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold414 | 154356 | 157821 | - | SOLCI004419800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 53,224.67 Da | 53.78 | 70.00 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 265 | 329 | 4.15449E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 1.6405E-43 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 121 | 3.7E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 265 | 332 | 8.4E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 128 | 6.54E-27 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 257 | 336 | 1.03E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 248 | 342 | 1.5E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 29 | 130 | 1.3E-23 | IPR036431 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 4.9E-26 | - |
| SMART | SM00398 | hmgende2 | 264 | 333 | 1.9E-18 | IPR009071 |
| SMART | SM00501 | bright_3 | 35 | 126 | 3.2E-26 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 265 | 332 | 14.833306 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 24.738901 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 406 | - | - |
| Coils | Coil | Coil | 314 | 334 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010326835.1 | high mobility group B protein 15 [Solanum lycopersicum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C7F1 | High mobility group B protein 15 OS=Solanum chilense OX=4083 GN=EJD97_015707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology