Basic Information
Locus ID:
SOLCI004405100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4121 | 39309 | 42840 | - | SOLCI004405100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 90,908.73 Da | 34.65 | 81.05 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 45 | 151 | 1.7304E-17 | IPR001480 |
| CDD | cd14066 | STKc_IRAK | 500 | 768 | 1.39711E-90 | - |
| Pfam | PF00069 | Protein kinase domain | 497 | 701 | 2.1E-46 | IPR000719 |
| Pfam | PF00954 | S-locus glycoprotein domain | 272 | 340 | 6.7E-8 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 78 | 165 | 1.5E-17 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 79 | 165 | 9.16E-21 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 474 | 767 | 1.75E-75 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 30 | 150 | 5.8E-16 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 570 | 782 | 7.8E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 480 | 569 | 3.1E-31 | - |
| SMART | SM00220 | serkin_6 | 494 | 766 | 4.7E-29 | IPR000719 |
| SMART | SM00108 | blect_4 | 34 | 151 | 1.3E-17 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 443 | 819 | 1.8E-153 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 1 | 479 | 6.6E-66 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 494 | 777 | 35.721577 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 27 | 148 | 13.693848 | IPR001480 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 617 | 629 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 500 | 523 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24080.2 | - | 0 |
| RefSeq | XP_015077993.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 isoform X1 [Solanum pennellii] | 0 |
| Q9FLV4 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B7D2 | Receptor-like serine/threonine-protein kinase OS=Solanum chilense OX=4083 GN=EJD97_015627 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2233 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16179 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018760 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052920 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg15179 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26489 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019974 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01480, Sgl06645 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003230, gene:ENSEOMG00000031401 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003960 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202820 |
| Apiaceae | Apium graveolens | 1 | Ag3G02010 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1798.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G26594 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003657m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g077020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1518 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1618, Cgl09G1619 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11761 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2819 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010486 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb7G33435, Lb7G33613, Lb7G33615 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1474, evm.TU.LG06.1928, evm.TU.LG14.747 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.63, evm.TU.Scaffold_4_RagTag.64 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3117 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2213 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001486 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17631, nbisL1-mrna-2317 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6331 |
| Salicaceae | Populus euphratica | 3 | populus_peu28138, populus_peu28139, populus_peu29589 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632001, gene-LOC132639502 |
| Solanaceae | Solanum chilense | 2 | SOLCI003387000, SOLCI004405100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013075, gene-LOC107021797 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10794 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1521 |