Basic Information
Locus ID:
SOLCI004345800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
transcription, DNA-templated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4052 | 74379 | 77297 | - | SOLCI004345800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 22,041.68 Da | 67.59 | 42.81 | -1.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28840.1 | 0 | |
| RefSeq | XP_004251618.1 | protein SPEAR1-like [Solanum lycopersicum] | 0 |
| Q6IDB0 | Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7J2D8 | Protein SPEAR3-like OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15499, jg3831 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10729, gene_10730 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014586, Ah014588 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g196910, BVRB_8g196920 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25016, Sbi_jg25018, Sbi_jg8870, Sbi_jg8871 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19733, Seu_jg19734 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00007766, GOSA_00007767, GOSA_00007768 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42258, Sgl42259, Sgl47034, Sgl47035 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009020, gene:ENSEOMG00000011088 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0019790, CQ.Regalona.r1.8BG0022590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256860 |
| Apiaceae | Apium graveolens | 1 | Ag10G01519 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G011780 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702543, gene-LOC103709535, gene-LOC103715592 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1941.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G09217, Ftri4G11347 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20080.1, AT4G28840.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002311m.g.v1.0, Thhalv10026355m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g33380.v2.2, Sp7g26840.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g015950.2N, BniB02g083770.2N, BniB03g069650.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1581 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003870 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2732, AH05.1433, BH02.2814, BH05.1601, CH02.3727 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0028430, gene-QOZ80_1BG0078620 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015550 |
| Poaceae | Oryza coarctata | 4 | Oco01G017160, Oco02G017390, Oco09G016550, Oco10G016390 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48530.1, LOC_Os05g48570.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G229800, gene-BS78_09G232100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505757, Pt_Chr0602335 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G015470, Chr02G012810, Chr03G000710, Chr03G013400 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G638800, Tel3E01G446400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG040150, gene_TRIDC3BG045350 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G389800.1, TraesCS1B02G417900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156860_P001, Zm00001eb343410_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13696, nbis-gene-24884, nbis-gene-26078 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10865, Zma_g27363, Zma_g28782, Zma_g8422 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2859, evm.TU.LG02.2860, evm.TU.LG06.980 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13091, nbisL1-mrna-25649 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11976, nbisL1-mrna-1774 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16837, nbisL1-mrna-4695 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1098, evm.TU.utg000033l.298 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000229 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14784, nbisL1-mrna-18356 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1209, nbisL1-mrna-8268 |
| Salicaceae | Populus euphratica | 3 | populus_peu19337, populus_peu21952, populus_peu26631 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602266, gene-LOC132638775 |
| Solanaceae | Solanum chilense | 2 | SOLCI004345800, SOLCI006671900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006862, gene-LOC107025703 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.2463_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1435 |