Basic Information
Locus ID:
SOLCI004334800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4041 | 27890 | 29651 | + | SOLCI004334800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 64,900.83 Da | 41.45 | 99.00 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 58 | 6.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 66 | 3.66E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 143 | 374 | 5.69E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 90 | 392 | 3.5E-17 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 74 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 29 | 66 | 0.0097 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 57 | 10.10684 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025885977.1 | uncharacterized protein LOC104646557 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BC43 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_015400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003914 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633328 |
| Solanaceae | Solanum chilense | 2 | SOLCI004334800, SOLCI006256100 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107012592, gene-LOC107013651, gene-LOC107013656 ... |