Basic Information
Locus ID:
SOLCI004312600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zc3h12a-like Ribonuclease NYN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4019 | 29596 | 35973 | + | SOLCI004312600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 61,689.86 Da | 44.22 | 76.16 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 5 | 212 | 9.0E-71 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 255 | 480 | 2.9E-62 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 271 | 446 | 2.4E-216 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 13 | 481 | 2.4E-216 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | 8.637562 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 552 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16650.1 | proteinaceous RNase P 2. | 0 |
| RefSeq | XP_004241313.1 | proteinaceous RNase P 2-like [Solanum lycopersicum] | 0 |
| Q680B9 | Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BCC4 | ribonuclease P OS=Solanum chilense OX=4083 GN=EJD97_015318 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology