Basic Information
Locus ID:
SOLCI004308000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4010 | 16206 | 29748 | + | SOLCI004308000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 88,725.98 Da | 42.25 | 81.73 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 519 | 798 | 1.20897E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 554 | 589 | 2.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 714 | 0.0016 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 5.6E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 546 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 518 | 798 | 1.97E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 481 | 644 | 9.9E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 798 | 6.7E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 636 | 672 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 798 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 547 | 5.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 589 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 593 | 633 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 714 | 6.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 557 | 598 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 557 | 590 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 600 | 642 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.309443 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 379 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_010321144.1 | transcriptional corepressor LEUNIG-like isoform X1 [Solanum lycopersicum] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2B828 | LisH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_015297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI004308000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018790 |