Basic Information
Locus ID:
SOLCI004293900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4 | 167403 | 171644 | - | SOLCI004293900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 45,478.70 Da | 37.26 | 88.93 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 67 | 387 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 70 | 332 | 9.5E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 68 | 331 | 7.09E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 332 | 388 | 1.27E-16 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 97 | 394 | 3.1E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 119 | 290 | 1.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 67 | 387 | 7.4E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 98 | 256 | 29.502048 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 261 | 336 | 28.336624 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 275 | 283 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 272 | 300 | 3.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 189 | 218 | 3.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 227 | 256 | 3.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 155 | 184 | 3.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 307 | 336 | 3.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 361 | 378 | 3.7E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 68 | 393 | 44.992287 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_004243994.1 | DNA repair protein recA homolog 1, chloroplastic [Solanum lycopersicum] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CK44 | DNA repair protein recA homolog 1, chloroplastic OS=Solanum chilense OX=4083 GN=EJD97_015233 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology