Basic Information
Locus ID:
SOLCI004288900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3995 | 16957 | 25559 | + | SOLCI004288900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 46,028.46 Da | 56.80 | 81.45 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 8.18272E-32 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 166 | 215 | 7.57648E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 389 | 424 | 6.5E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 278 | 302 | 4.5E-7 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 175 | 210 | 1.8E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-18 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 331 | 362 | 7.2E-11 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 170 | 225 | 2.39E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 331 | 368 | 2.88E-10 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 371 | 431 | 1.6E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 7.83E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 274 | 303 | 3.92E-6 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 165 | 215 | 4.7E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 328 | 364 | 7.8E-12 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.1E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 268 | 307 | 2.0E-10 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 381 | 428 | 1.0E-22 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.2E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 172 | 212 | 9.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 389 | 426 | 3.6E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 305 | 1.7E-72 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.326544 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 171 | 213 | 11.992661 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 386 | 427 | 14.908409 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 399 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 415 | 430 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 355 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 400 | 414 | 1.2E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 120 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015073813.1 | ubiquitin receptor RAD23c-like [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2B7A2 | Ubiquitin receptor RAD23 OS=Solanum chilense OX=4083 GN=EJD97_015208 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology