Basic Information
Locus ID:
SOLCI004229600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3928 | 13442 | 20753 | - | SOLCI004229600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 46,006.87 Da | 56.98 | 79.98 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 217 | 264 | 6.80496E-15 | - |
| Pfam | PF12906 | RING-variant domain | 217 | 263 | 6.6E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 266 | 3.12E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 271 | 6.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 216 | 264 | 5.1E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 209 | 270 | 20.43895 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 169 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004229192.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X1 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2B7Y9 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology