Basic Information
Locus ID:
SOLCI004205800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold390 | 230192 | 236909 | - | SOLCI004205800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 166,286.45 Da | 38.29 | 109.89 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 608 | 808 | 5.82153E-105 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 918 | 1212 | 1.25497E-86 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1235 | 1455 | 1.843E-116 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 294 | 582 | 2.35166E-96 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 928 | 1164 | 4.7E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1254 | 1401 | 1.0E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 626 | 760 | 2.7E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 294 | 554 | 2.2E-26 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 283 | 582 | 1.44E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1227 | 1468 | 1.91E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 921 | 1213 | 8.11E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 603 | 824 | 2.51E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1220 | 1473 | 3.4E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 237 | 594 | 1.4E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 883 | 1218 | 1.5E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 603 | 834 | 4.2E-70 | IPR027417 |
| SMART | SM00382 | AAA_5 | 635 | 808 | 1.5E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1263 | 1448 | 2.6E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 293 | 574 | 33.097672 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 920 | 1200 | 31.30275 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1237 | 1471 | 16.71349 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 608 | 831 | 22.602482 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 733 | 747 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_004248540.1 | putative ABC transporter C family member 15 isoform X1 [Solanum lycopersicum] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CDK7 | ABC-type xenobiotic transporter OS=Solanum chilense OX=4083 GN=EJD97_014896 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology