Basic Information
Locus ID:
SOLCI004158400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3842 | 50651 | 55841 | - | SOLCI004158400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 41,193.07 Da | 38.11 | 75.76 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 308 | 356 | 1.0E-10 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 47 | 256 | 1.4E-22 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 270 | 359 | 2.1E-16 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 43 | 266 | 1.4E-9 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 301 | 359 | 3.1E-15 | - |
| SMART | SM00326 | SH3_2 | 304 | 359 | 2.6E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 301 | 360 | 18.965584 | IPR001452 |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 191 | 211 | - | - |
| Coils | Coil | Coil | 147 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015063062.1 | SH3 domain-containing protein 2 [Solanum pennellii] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | M0ZTZ3 | Clathrin binding protein OS=Solanum tuberosum OX=4113 GN=102580820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology