Basic Information
Locus ID:
SOLCI004152400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3837 | 53828 | 57692 | + | SOLCI004152400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 58,174.46 Da | 59.59 | 84.91 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 273 | 321 | 1.39763E-14 | - |
| Pfam | PF12906 | RING-variant domain | 273 | 320 | 4.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 324 | 1.41E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 329 | 5.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 272 | 321 | 3.3E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 265 | 327 | 18.74369 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 265 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015056895.1 | uncharacterized protein LOC107003143 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2BDA1 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014706 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology