Basic Information
Locus ID:
SOLCI004114400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3790 | 53836 | 55236 | + | SOLCI004114400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 53,447.54 Da | 46.47 | 85.17 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 188 | 230 | 2.4E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 158 | 182 | 0.078 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 349 | 456 | 2.9E-35 | IPR032867 |
| SUPERFAMILY | SSF48452 | TPR-like | 130 | 329 | 2.54E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 87 | 352 | 1.3E-25 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 186 | 218 | 6.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 221 | 254 | 1.8E-4 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 74 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_004242943.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Solanum lycopersicum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BDR7 | DYW_deaminase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014601 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology