Basic Information
Locus ID:
SOLCI004087700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3763 | 12195 | 17678 | + | SOLCI004087700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 162,625.16 Da | 35.72 | 107.31 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1192 | 1412 | 1.81118E-122 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 879 | 1169 | 3.11658E-72 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 266 | 553 | 3.00129E-90 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 578 | 781 | 7.47948E-95 | - |
| Pfam | PF00005 | ABC transporter | 604 | 733 | 1.1E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 897 | 1120 | 2.3E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1211 | 1359 | 7.9E-33 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 267 | 532 | 5.4E-21 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 602 | 794 | 8.77E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 256 | 560 | 1.11E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 882 | 1176 | 7.85E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1186 | 1420 | 3.93E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 836 | 4.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1177 | 1430 | 6.9E-83 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 239 | 564 | 1.1E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 849 | 1175 | 3.4E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 607 | 781 | 1.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1220 | 1413 | 7.3E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 268 | 545 | 32.253448 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 578 | 804 | 20.04147 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 882 | 1157 | 33.356258 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1194 | 1428 | 19.041075 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 706 | 720 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_004239178.1 | putative ABC transporter C family member 15 [Solanum lycopersicum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BGQ9 | ABC-type xenobiotic transporter OS=Solanum chilense OX=4083 GN=EJD97_014508 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology