Basic Information
Locus ID:
SOLCI004080500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3757 | 16181 | 53562 | - | SOLCI004080500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 24,586.19 Da | 51.80 | 90.61 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 78 | 3.63695E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 86 | 173 | 5.3E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 9.1E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 88 | 4.06E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 102 | 5.5E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.1E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 14.264001 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.104164 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.6E-30 | IPR002100 |
| Coils | Coil | Coil | 89 | 109 | - | - |
| Coils | Coil | Coil | 123 | 143 | - | - |
| Coils | Coil | Coil | 145 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_015077497.1 | MADS-box protein AGL42-like [Solanum pennellii] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B8S6 | MADS-box protein SOC1-like OS=Solanum chilense OX=4083 GN=EJD97_014486 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology