Basic Information
Locus ID:
SOLCI004069200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Conserved gene of
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3745 | 24385 | 26320 | + | SOLCI004069200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.05 | 17,452.11 Da | 49.29 | 75.73 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 60 | 104 | 2.00319E-8 | - |
| Pfam | PF17123 | RING-like zinc finger | 60 | 89 | 2.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 110 | 1.1E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 132 | 4.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 60 | 103 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 104 | 11.102496 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015064683.1 | E3 ubiquitin-protein ligase WAV3-like [Solanum pennellii] | 0 |
| F4JSV3 | Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana OX=3702 GN=EDA40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B8Z8 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri13G26327, Ftri3G03542, Ftri8G07275 |
| Brassicaceae | Brassica nigra | 1 | BniB05g046860.2N |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044936, gene-QYE76_061876, gene-QYE76_070877 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG034800 |
| Solanaceae | Solanum chilense | 1 | SOLCI004069200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009889 |