Basic Information
Locus ID:
SOLCI004059200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3731 | 9863 | 10810 | - | SOLCI004059200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 35,597.75 Da | 50.90 | 79.17 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 138 | 181 | 3.3748E-17 | - |
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 198 | 2.2E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 189 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 9.5E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 135 | 188 | 0.0086 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.976127 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 244 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004252713.1 | RING-H2 finger protein ATL54 [Solanum lycopersicum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2B965 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_014404 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology