Basic Information
Locus ID:
SOLCI004021600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Cysteine-rich receptor-like protein kinase 42
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3693 | 93593 | 94202 | + | SOLCI004021600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 20,179.80 Da | 40.06 | 85.92 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 153 | 183 | 5.1E-6 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 51 | 99 | 6.3E-7 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 37 | 102 | 9.8E-10 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 116 | 184 | 4.7E-6 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1 | 102 | 12.198154 | IPR002902 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.3 | - | 0 |
| RefSeq | XP_049404524.1 | cysteine-rich receptor-like protein kinase 42 [Solanum stenotomum] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B9E1 | Gnk2-homologous domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_014279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1037 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14716, nbisL1-mrna-14717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5018 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12600 |
| Salicaceae | Populus euphratica | 2 | populus_peu30147, populus_peu30148 |
| Solanaceae | Solanum chilense | 1 | SOLCI004021600 |