Basic Information
Locus ID:
SOLCI003988900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3657 | 1974 | 5726 | + | SOLCI003988900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 70,299.22 Da | 46.20 | 81.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 3.97383E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 118 | 8.2E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 463 | 1.5E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 4.47E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 121 | 1.3E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.219954 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 487 | 87.768394 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 628 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_025885492.1 | BTB/POZ domain-containing protein NPY3 isoform X1 [Solanum lycopersicum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B9K6 | BTB/POZ domain-containing protein NPY4 OS=Solanum chilense OX=4083 GN=EJD97_014165 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology