Basic Information
Locus ID:
SOLCI003965200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Possibly involved in carbohydrate binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3629 | 58444 | 70062 | - | SOLCI003965200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 54,760.41 Da | 42.10 | 90.02 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 31 | 349 | 8.2E-79 | IPR000490 |
| Pfam | PF07983 | X8 domain | 368 | 438 | 2.9E-18 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 31 | 350 | 1.92E-83 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 361 | 452 | 5.0E-10 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 30 | 356 | 6.9E-112 | - |
| SMART | SM00768 | X8_cls | 367 | 452 | 2.9E-46 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 265 | 278 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_004236940.1 | glucan endo-1,3-beta-glucosidase 3 [Solanum lycopersicum] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BBZ1 | X8 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014104 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology