Basic Information
Locus ID:
SOLCI003913300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3574 | 4649 | 5155 | - | SOLCI003913300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 19,579.39 Da | 46.03 | 68.45 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 114 | 155 | 6.78853E-17 | - |
| Pfam | PF13639 | Ring finger domain | 113 | 155 | 3.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 161 | 6.31E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 163 | 1.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 154 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 155 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 84 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17970.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027769337.1 | RING-H2 finger protein ATL79-like [Solanum pennellii] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BFF3 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_013902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13039 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21230 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028652, Pov_00033909, Pov_00033910 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132619581, gene-LOC132637834, gene-LOC132637850 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000413600, SOLCI002808400, SOLCI003913300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005954, gene-LOC107022247, gene-LOC114075203 |