Basic Information
Locus ID:
SOLCI003907900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3569 | 14122 | 14718 | + | SOLCI003907900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 18,687.94 Da | 43.09 | 76.55 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 75 | 1.48536E-11 | - |
| Pfam | PF00240 | Ubiquitin family | 5 | 77 | 9.3E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 78 | 4.37E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 5.5E-12 | - |
| SMART | SM00213 | ubq_7 | 1 | 77 | 0.0012 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 12.618054 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 101 | - | - |
| Coils | Coil | Coil | 85 | 105 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_016482646.1 | PREDICTED: uncharacterized protein LOC107803443 isoform X1 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A6N2BI77 | Ubiquitin-like domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_013892 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10615 |
| Apiaceae | Apium graveolens | 1 | Ag11G03313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.994.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32360.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012060.2N, BniB08g020360.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026741 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1355 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20438, nbisL1-mrna-20462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21332 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.321 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4733 |
| Salicaceae | Populus euphratica | 2 | populus_peu22662, populus_peu24076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602560 |
| Solanaceae | Solanum chilense | 2 | SOLCI003907900, SOLCI007324400 |