Basic Information
Locus ID:
SOLCI003887000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
WDR3
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3549 | 102695 | 110364 | + | SOLCI003887000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 105,035.00 Da | 40.25 | 88.38 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 399 | 692 | 1.96452E-61 | - |
| CDD | cd00200 | WD40 | 100 | 513 | 1.81293E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 136 | 1.9E-5 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 795 | 893 | 6.2E-14 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 178 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 431 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 575 | 607 | 2.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 512 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 67 | 94 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 692 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 219 | 2.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 372 | 3.66E-45 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 355 | 695 | 4.39E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 517 | 1.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 222 | 1.1E-44 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 518 | 786 | 1.2E-44 | IPR015943 |
| SMART | SM00320 | WD40_4 | 393 | 431 | 0.0056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 513 | 7.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 471 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 566 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 94 | 0.008 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 650 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 290 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 3.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 608 | 2.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 515 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 576 | 610 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 576 | 617 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 618 | 650 | 9.124694 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 660 | 692 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 222 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 692 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 618 | 659 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 181 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 440 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 137 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 222 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 137 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 515 | 11.101955 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 165 | 179 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 123 | 137 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 595 | 609 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 933 | - | - |
| Coils | Coil | Coil | 920 | 940 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21540.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004248528.1 | WD repeat-containing protein 3 [Solanum lycopersicum] | 0 |
| P87177 | Uncharacterized WD repeat-containing protein C3D6.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC3D6.12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BFH6 | Utp12 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_013815 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3518 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1104, gene_20182 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030622 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27200, Sbi_jg33331 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005714 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71296, Sgl74891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008406, gene:ENSEOMG00000038751 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0018460, CQ.Regalona.r1.7BG0021050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273730 |
| Apiaceae | Apium graveolens | 1 | Ag10G01989 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695733 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.990.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33505 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024329m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g020710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1562 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1614, Cgl02G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0249s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1549 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005009, Pov_00025481 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24696 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4884, CH01.5486 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234020, gene-QOZ80_3BG0293970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0411240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070696, gene-QYE76_070719 |
| Poaceae | Oryza coarctata | 2 | Oco05G003130, Oco06G003140 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G478200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100050, Pt_Chr0100071 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G037100, Chr12G002370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G524700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG055020, gene_TRIDC4BG053610 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G370000.1, TraesCS4B02G317800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb004160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4475 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4408 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1659, evm.TU.LG11.1012 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g08170, gene.Posoc08g08180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.918 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4286 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.907 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005094 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12605 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5818 |
| Salicaceae | Populus euphratica | 1 | populus_peu11629 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629973, gene-LOC132630654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003887000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002644 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5583 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1968 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33080.v3.1 |