Basic Information
Locus ID:
SOLCI003769700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3431 | 99041 | 112421 | - | SOLCI003769700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 58,541.95 Da | 37.57 | 89.13 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 509 | 1.82817E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 250 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 509 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 467 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 339 | 0.065 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 210 | 509 | 1.08E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 203 | 513 | 2.7E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 425 | 467 | 0.22 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 510 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 250 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 1.1 | IPR001680 |
| SMART | SM00668 | ctlh | 48 | 105 | 0.0049 | IPR006595 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 4.8E-7 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 8.54163 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 477 | 516 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 476 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 218 | 251 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 251 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 477 | 509 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 10.996502 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 105 | 9.180501 | IPR006595 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004247123.1 | WD repeat-containing protein WDS homolog [Solanum lycopersicum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BDS0 | WD repeat-containing protein 26 OS=Solanum chilense OX=4083 GN=EJD97_013404 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology