Basic Information
Locus ID:
SOLCI003766000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold343 | 1533 | 10632 | - | SOLCI003766000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 198,369.84 Da | 45.74 | 79.09 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1490 | 1753 | 7.27325E-149 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 368 | 640 | 8.62378E-136 | - |
| CDD | cd15725 | FYVE_PIKfyve_Fab1 | 29 | 96 | 4.74592E-30 | - |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 389 | 630 | 3.0E-36 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1529 | 1695 | 3.6E-33 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 30 | 98 | 4.2E-17 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1697 | 1751 | 1.0E-6 | IPR002498 |
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 390 | 626 | 8.24E-5 | IPR027410 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 28 | 104 | 5.76E-20 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 434 | 606 | 3.98E-44 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1489 | 1753 | 3.14E-78 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1462 | 1610 | 1.9E-37 | IPR027484 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 606 | 2.7E-56 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 111 | 1.6E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 1613 | 1754 | 1.6E-41 | - |
| SMART | SM00064 | fyve_4 | 25 | 100 | 6.8E-22 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1463 | 1754 | 6.7E-124 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1430 | 1753 | 57.824551 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 33 | 99 | 12.74341 | IPR017455 |
| Coils | Coil | Coil | 1056 | 1083 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_004235530.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like isoform X2 [Solanum lycopersicum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C848 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Solanum chilense OX=4083 GN=EJD97_013375 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology