halophFGD

Basic Information

Locus ID: SOLCI003734000

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Short Name: LHP1

Description: Chromo domain protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold34	246781	251117	+	SOLCI003734000

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.79	58,624.57 Da	44.45	75.31	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00024	CD_CSD	64	113	7.31066E-20	-
Pfam	PF00385	Chromo (CHRromatin Organisation MOdifier) domain	64	112	1.1E-12	IPR023780
SUPERFAMILY	SSF54160	Chromo domain-like	55	121	5.79E-18	IPR016197
Gene3D	G3DSA:2.40.50.40	-	44	125	2.4E-20	-
SMART	SM00298	chromo_7	63	116	1.3E-13	IPR000953
SMART	SM00300	ChS_2	464	538	5.4E-8	IPR008251
ProSiteProfiles	PS50013	Chromo and chromo shadow domain profile.	64	123	17.046301	IPR000953
ProSitePatterns	PS00598	Chromo domain signature.	81	101	-	IPR023779
MobiDBLite	mobidb-lite	consensus disorder prediction	117	145	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	127	145	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	44	-	-

Gene Ontology

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K11453 (chromobox protein 6)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G17690.2	-	0
RefSeq	XP_004248539.1	chromo domain protein LHP1-like [Solanum lycopersicum]	0
Swiss-Prot	Q944N1	Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2	0
TrEMBL	A0A6N2CLL1	Chromo domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_013290 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Solanaceae	Solanum chilense	1	SOLCI003734000
Solanaceae	Solanum pennellii	1	gene-LOC107032159